Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKVIASHSNGQEPEGEELNYRKTHEALERWKEKWPSNYKRINKVNASSSTEQGKTGKMGVQTDEKTVNYLMRKTNISEQNSQIQTRFLLIDQENQEVRLALLHSYQPPK
1OTJ Chain:A ((161-226))
-----------------EYKYRKTEEEHQRWREAVAKNPPLLHPVVRTHPV----SGKQALFVNE---GFTTRIVDVSEKESEALLSFLFAHITKPEFQVRWRWQPNDIA
General information:
TITO was launched using:
RESULT:
Template:
1OTJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 12405 for 307 contacts (40.4/contact) +
2D Compatibility (PS) -6958 + (NN) -146 + (LL) 1236
1D Compatibility (HY) -2400 + (ID) 1000
Total energy: 3137.0 ( 10.22 by residue)
QMean score : 0.261
(partial model without unconserved sides chains):
PDB file :
Tito_1OTJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OTJ-query.scw
PDB file :
Tito_Scwrl_1OTJ.pdb
: