Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ----MIFSVAIVDMATDLYSVALPSIANYFEVGGRVVQLTISLNLVGLAMSGLIYGPLSDHYGRRPVMLIGMTIFTLASIACYIADNIVLLILIRFIQGVGAGVAGVVGYAAIRDMYSGSEYSRVVSKLNMIVALSPGIAPVVSSHIISHGYHWKFLFFIISLAAIIMLIFIYFKLQETLNINKNKTNITKIIIDVSKQYISTFRNYRFLGFSTIHGLTFMWLWAYIVNYPFIF-ESMGIEVRHFGYFISIIVIFYIIGTLINRRCVQKVGVSRMLMIGLVLPIISDCSLIYLYLIDKLNIYTLIMCWVPNNIGLALIISNNVTSAL-ETIEGIGLGSAVLSFCNMMFGATGIYIVGKFFSYGVLSNLLLTVICSTIAILIYGLLKYAEEHLKD |
| 2GFP Chain:A ((9-383)) | LLLMLVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT-MWNWRACYLFLLVLCAGVTFSMARWMPETRPVDAPRTRLLT-------SYKTLFGNSGFNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNK--RFSTLMWQSVICCLLAGLLMWIPDWFGVMNVWTLLVPAALFFFGAGMLFPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLMGLLIVLCWLPL--------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2GFP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -381645 for 3210 contacts (-118.9/contact) +
2D Compatibility (PS) -36336 + (NN) 10030 + (LL) 1780
1D Compatibility (HY) -26000 + (ID) 3800
Total energy: -435971.0 ( -135.82 by residue)
QMean score : 0.230
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