Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNFTLPELPYDKTALEPY-ISAKTLDFHYDKHHKGYLNKLNELIENTDYQNVKIEELIMKVHGNSDEVPVFNNAAQVWNHTFYWNSMKKSGGDKPKEDGLLAKKIQDDIGGFDKFHEEFFNHGIGQFGSGWVWLVLERGKLKITKTPNADLPLIYDQVPLLTMDVWEHAYYLDCQNRRIDYIKIFLDHLINWDFAEENLKKNT
1MY6 Chain:A ((2-196))
--FVQEPLPFDPGALEPYGMSAKTLEFHYGKHHKGYVDNLNKLTQDTELADKSLEDVIRTTYGDAAKVGIFNNAAQVWNHTFFWNSLKPGGGGVPTGD--VAARINSAFGSYDEFKAQFKNAAATQFGSGWAWLVLEAGTLKVTKTANAENPLVHGQVPLLTIDVWEHAYYLDYQNRRPDFIDNFLNQLVNWDFVAKNLAA--
General information:
TITO was launched using:
RESULT:
Template:
1MY6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -121221 for 1572 contacts (-77.1/contact) +
2D Compatibility (PS) -20393 + (NN) -8180 + (LL) 260
1D Compatibility (HY) -19600 + (ID) 5500
Total energy: -174634.0 ( -111.09 by residue)
QMean score : 0.616
(partial model without unconserved sides chains):
PDB file :
Tito_1MY6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1MY6-query.scw
PDB file :
Tito_Scwrl_1MY6.pdb
: