Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSKNIKNILSITELLSGWL-LHDFANSMNGIMFGLEELEAGNQNDASTHREALLLLKESSDDLIYKHKV---MKQAYSSSADNRSFSQTKLNIE-NYLLKKK
1AHG Chain:A ((205-283))
----------------GWLPLFDFA--YQGFARGLEEDAEGLRAFAAMHKELIVASSYSKNFGLYNERVGACTLVAADSETVDRAFSQMKAAIRANYSSPPA
General information:
TITO was launched using:
RESULT:
Template:
1AHG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 9805 for 378 contacts (25.9/contact) +
2D Compatibility (PS) -7474 + (NN) 3071 + (LL) 1280
1D Compatibility (HY) -2400 + (ID) 1450
Total energy: 2832.0 ( 7.49 by residue)
QMean score : -0.027
(partial model without unconserved sides chains):
PDB file :
Tito_1AHG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AHG-query.scw
PDB file :
Tito_Scwrl_1AHG.pdb
: