Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIVVLSGYGLNCEKETAFAFVECGRKLGVNNIEVRIVHINEIIKNPGELRLSNILAIP--GGFSYGDDTGAGNAFALRVKNN--LLDKFQEFLSQDK-LVIGICNGCQILA---KLIPEFSNL--ALIRNDIGNYQCRWIKVKVSPQSSSVWLQDLNELYLPIA--HGEGKF-FMNQGVLDQLIENNSVALRYINESGDYANLQFPYNPNGSTYDLAALSDKSGRVLALMPHPERGIFFTQQDNWPLEKEKCKRLKIAMPKYGDGMLIFENALRYFC
3UGJ Chain:A ((1049-1280))
-KVAVLREQGVNSHVEMAAAF----HRAGFDAIDV---HMSDLLG--GRIGLGNFHALVACGGFSYGDVLGAGEGWAKSILFNHRVRDEFETFFHRPQTLALGVCNGCQMMSNLRELIPG-SELWPRFVRNHSDRFEARFSLVEVT-QSPSLLLQGMVGSQMPIAVSHGEGRVEVRDDAHLAALESKGLVALRYVDNFGKVTE-TYPANPNGSPNGITAVTTENGRVTIMMPHPER-VFRTVANSWHPENWGEDSPWMRIFRNARKQLG---------
General information:
TITO was launched using:
RESULT:
Template:
3UGJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -111938 for 1768 contacts (-63.3/contact) +
2D Compatibility (PS) -23897 + (NN) -13293 + (LL) 1252
1D Compatibility (HY) -16800 + (ID) 4400
Total energy: -169076.0 ( -95.63 by residue)
QMean score : 0.434
(partial model without unconserved sides chains):
PDB file :
Tito_3UGJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UGJ-query.scw
PDB file :
Tito_Scwrl_3UGJ.pdb
: