Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--------MGIKIAPSILSANFAKLGEEVKRINNLGVDYIHIDVMDGNFVPNITIGPGVISTIRKYTNLFFDVHLMIKSPGDHVESFINAGADIITIHAEAEV--HLERLIRKIKSYKNVNDAKKKVQVGVSIVPSTSPGIFEYIIHELDIVLIMTVNPGFGGQEFIYSQLGKISVVKKMIRERGLKTQISVDGGVSLSNAADIIKAGADILVAGSAIFRAKNMKKAVNDFKNLSL--
1RPX Chain:A ((1-230))
SRVDKFSKSDIIVSPSILSANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPNITIGPLVVDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKS--------LGAKAGVVLNPGTPLTAIEYVLDAVDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAPDYAEAIKGIKTSKRPE
General information:
TITO was launched using:
RESULT:
Template:
1RPX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -212981 for 1847 contacts (-115.3/contact) +
2D Compatibility (PS) -23576 + (NN) -9560 + (LL) 320
1D Compatibility (HY) -22400 + (ID) 5750
Total energy: -273947.0 ( -148.32 by residue)
QMean score : 0.558
(partial model without unconserved sides chains):
PDB file :
Tito_1RPX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1RPX-query.scw
PDB file :
Tito_Scwrl_1RPX.pdb
: