Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKVRTVGKSAKKFVTGVIHIRATFNNTFINVTDVQGNTLYQTSVGAHGFSGSRKSTPYAAGKASEVAAKTAIEKFGMKVVSVIIRGPGFGTEAAVKALQSCGLTVTSIADKTAISHNGCRLRKKRRV--
1FJG Chain:K ((11-129))
----------KRQVASGRAYIHASYNNTIVTITDPDGNPITWSSGGVIGYKGSRKGTPYAAQLAALDAAKKAMA-YGMQSVDVIVRGTGAGREQAIRALQASGLQVKSIVDDTPVPHNGCRPKKKFRKAS
General information:
TITO was launched using:
RESULT:
Template:
1FJG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57292 for 885 contacts (-64.7/contact) +
2D Compatibility (PS) -13021 + (NN) -6343 + (LL) 800
1D Compatibility (HY) -4400 + (ID) 2800
Total energy: -83056.0 ( -93.85 by residue)
QMean score : 0.578
(partial model without unconserved sides chains):
PDB file :
Tito_1FJG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FJG-query.scw
PDB file :
Tito_Scwrl_1FJG.pdb
: