Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIITIFGPPGSGKGTQSSLLIERYNLKLISVGDLLRNIISSGSELGKKIKDTVESGNLIQDGVICELLYDQLAL--MDDNFLFDGFPRNLNQAHFLTQILRERYNRDVDIVIELQLNDKVAIDRLKNRLVCLDCKSVYSTSSFKDDNNLVCTRCKSARLEKRIDDSDLSAIDRRIGEYHVQVKSLREYYRD-K-LLMIDANLNVDQVKQEIESKISCSLV
1AK2 Chain:A ((17-232))
VRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEK-RKEKLDSVIEFSIPDSLLIRRITGRLIHPQSGRSYHEEFNPPKE-PMKDDITGEPLIRRSDD-NKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAFSKATS
General information:
TITO was launched using:
RESULT:
Template:
1AK2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -122931 for 1539 contacts (-79.9/contact) +
2D Compatibility (PS) -23124 + (NN) -9993 + (LL) -8
1D Compatibility (HY) -11200 + (ID) 3500
Total energy: -170756.0 ( -110.95 by residue)
QMean score : 0.647
(partial model without unconserved sides chains):
PDB file :
Tito_1AK2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AK2-query.scw
PDB file :
Tito_Scwrl_1AK2.pdb
: