Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNNAIKLNSIFTELSKKKKPKLIGRGIGCGKGKTSGRGHKGQKARSGTSI-NGFEGGQQSIYTRLPKRGFNPIRRNICSIINVGDVQRLIEAKKIEKNSVIDKEILHKLGFIKSIKDKIKLLNKGKLNERCVFHVDFASEAAKKSVTSIGGSVEILS
4UY8 Chain:L ((1-142))
-----RLNTLSPAEGSKKAGKRLGRGIGSGLGKTGGRGHKGQKSRSGGGVRRGFEGGQMPLYRRLPKFGFTSRKAAITAEIRLSDLAKV-------EGGVVDLNTLKAANIIGIQIEFAKVILAGEVTTPVTVRGLRVTKGARAAIEAAGGKIEE--
General information:
TITO was launched using:
RESULT:
Template:
4UY8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28787 for 791 contacts (-36.4/contact) +
2D Compatibility (PS) -14595 + (NN) -763 + (LL) 1664
1D Compatibility (HY) -4800 + (ID) 2550
Total energy: -49831.0 ( -63.00 by residue)
QMean score : 0.344
(partial model without unconserved sides chains):
PDB file :
Tito_4UY8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4UY8-query.scw
PDB file :
Tito_Scwrl_4UY8.pdb
: