Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGQKVNPIGFRLKINNNTWDSVWYANK-DYKEKLHQDLFIRSYINESFKHAGLSKIIIERKVDLLSVTIHSSRPGVIIGKKGLDIEKVKQKIAEKVKNSVEVNVVGIKRPEIDAALISSSIAQQLEKRVSFRRAMKKAIQSCLRMGGGGIKVGCSGRLGGAEIARTEWYKEGRLPLHTLRANIDYAFCEAKTIYGIIGVKVWVYIVN
1HNW Chain:C ((2-204))
-GNKIHPIGFRLGITRD-WESRWYAGKKQYRHLLLEDQRIRGLLEKELYSAGLARVDIERAADNVAVTVHVAKPGVVIGRGGERIRVLREELAKLTGKNVALNVQEVQNPNLSAPLVAQRVAEQIERRFAVRRAIKQAVQRVMESGAKGAKVIVSGRIGGAEQARTEWAAQGRVPLHTLRANIDYGFALARTTYGVLGVKAYIFLGE
General information:
TITO was launched using:
RESULT:
Template:
1HNW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -101839 for 1518 contacts (-67.1/contact) +
2D Compatibility (PS) -22101 + (NN) -7373 + (LL) 260
1D Compatibility (HY) -17200 + (ID) 4550
Total energy: -152803.0 ( -100.66 by residue)
QMean score : 0.521
(partial model without unconserved sides chains):
PDB file :
Tito_1HNW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HNW-query.scw
PDB file :
Tito_Scwrl_1HNW.pdb
: