Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKRISLLRRIGLLMTNIGHTAIYSN-NSRVAVTLLHLSETYIVDVRRQDKCGYNS--VILGIGNF--KNIAKPQLEYLKKMGISNRCKLYESRLSDLSGIECGKKVGVNHFVVGQYLDITSYSIGKGFAGVMKRHNFCGLRASHGVSIAHRSQGSTGQCQDPGRVFKGKRMAGHLGSSRVTVQNMEILSIDHGNSTIVVKGNNVPGFKNSYVFVKDAIKKPLH---KDVPFPVGLLLDVSNDNASSLVS
3J7Y Chain:E ((92-324))
----PGSFRVGLIALKLGMMPLWTKDGQKHVVTLLQVQDCHVLKYTSK----GKMATLSVGGKTVSRFRKATSILEFYRELGLPPKQTVKIFNITDNAAIKPGTPLYAAHFRPGQYVDVTAKTIGKGFQGVMKRWGFKGQPATHGQTKTHRRPGAVATG-DIGRVWPGTKMPGKMGNIYRTEYGLKVWRINTKHNIIYVNG-SVPGHKNCLVKVKDSKLPAYKDLGKNLPFPTYFPDGDEEELPEDLYD
General information:
TITO was launched using:
RESULT:
Template:
3J7Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -110578 for 1484 contacts (-74.5/contact) +
2D Compatibility (PS) -23845 + (NN) -7153 + (LL) 488
1D Compatibility (HY) -8800 + (ID) 3350
Total energy: -153238.0 ( -103.26 by residue)
QMean score : 0.437
(partial model without unconserved sides chains):
PDB file :
Tito_3J7Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3J7Y-query.scw
PDB file :
Tito_Scwrl_3J7Y.pdb
: