Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MARRNKARKRKISPDSRYDSVLLMRFINVIMKYGKKSVAEKIVYNALSSAEKEVNERGVSIFETAVENVTPSVEVRSRRIGGATYQVPVEVKKDRAVSLALRWIVKSASAMRKKSGKGFFKCLCSEILDAYNKRGGAFKMCEEKYKMAEANKAFSHLRF
3GTY Chain:S ((9-155))
---------RQIPPDPVFGDVLVAKLINRVMWDGKKTIAQKIVYGAFDIIREKTKKDPLEVFRQAVENVKPVLEVRPRRVGGATYQVPIEVQEPRRTSLALRWIVEAA---RAKKGRPMKEKLAEEIIAAYNNTGTAIKKKEDTHRMAEANRAFAHYRW
General information:
TITO was launched using:
RESULT:
Template:
3GTY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -76595 for 1070 contacts (-71.6/contact) +
2D Compatibility (PS) -16133 + (NN) -8637 + (LL) 1168
1D Compatibility (HY) -12000 + (ID) 3600
Total energy: -115797.0 ( -108.22 by residue)
QMean score : 0.587
(partial model without unconserved sides chains):
PDB file :
Tito_3GTY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GTY-query.scw
PDB file :
Tito_Scwrl_3GTY.pdb
: