Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MILFSLLFSQSNTGARVILDKEIFYTELDGKMDLRFSYTFNKDSFNIKPKDKTSSYSYLRLFYLQRVYPNTQMGFNIKAEVSNISNLKALDIEKLNMEEWYFIIKNQGLGSIEYGKRNLVSQSMLINTSKIYVAAGGANGYWANYANLLGNEKKDDGAGYDKDEVFWVKPSIYSNYSGLKLKLKQPVVSYISPEIYNFQLGLSYVPGKNNLQYNN-LVASGLSYKNGLSDDISFTTTLTGEFARGDLADCTNKNPSNLQCHNQLLHWNFGLKLKFFNLDCIFSYGNSGKSGKKLDSEVSSTYYMNAGVAYRSDSRKLSLTYFSGGQDIIG--KGINKLTSYALSLEYPLFMGTSYYFDIVKFNTEEPKVMNNNSGYILLAGLKLIF |
4AUI Chain:A ((20-327)) | -------------------DVTLYGTIKAG---VETSRSVAHHGAQADRVKTATEIADLGSKIGFKGQEDLGNGLKAIWQLEQKAYVSGTDTGWGNRQS--FIGLKGGFGKVRVGRLN----NILKDT-------GNFNP-WEGKSYYSGLSNIAQP------------------------EERHVSVRYDSPEFAGFSGSVQYVPNDNSGKNRSESYHAGFNYKND-----GFFVQYAGSYKRH------NYTTEKHQVHRLVGGYDHDA-----LYASVAVQQQDAKLTWRDDNSHNSQTEVATTVAYRFGNVTPRVSYAHGFKGSVYDADHDNTYDQVVVGAEYDFSKRTSALVSAGWLQKGKGA--EKFVATVGGVGLRHKF |
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General information:
TITO was launched using:
| RESULT:
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Template: 4AUI.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 37459 for 2362 contacts (15.9/contact) +
2D Compatibility (PS) -32101 + (NN) -3584 + (LL) 6252
1D Compatibility (HY) 1200 + (ID) 2850
Total energy: 6376.0 ( 2.70 by residue)
QMean score : 0.158
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