Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MGYVINIQAIKKQIELSPQSCGVYQMIGDKDKVLYVGKAKNLKSRLSNYLRYENLSERTKFMLSQVIKVEVLVTENEIDALLLEARLIKSLKPPYNIIFKDGRSYPYIVISKHNYPRIAQYRGKFKKGEFHYYGPFISVAAVKQTMLSLQKTFLLRVCSDQYFASTKRPCIEYQIKRCSAPCVGKITKDDYCQSVKQTRDTLLGRNEKVKKQLSSTMEKCSKEENYELAAIYRDRLKFLEQIQMQSMDFSFEKDADFFGIARKEDLACIGVLSFRNKDNYGSTPYFVENCSDHPDDEILSTFLIKLYNSANIPPAQIYVSDFVTGKEIIEQALHNVTHKPIKALHAKSKKEHNLLKFVYDNSQRSLEQKLTDYKNNLEKFEELSKIFLLPNIPKRVEVYDNSHTSGNQQVGVMVVAGKEGFLK-SEYRKFTIKGEILGDDYEMMREVLTRRFSNNTKDVVPDFLLIDGGPGHISVVQNVLNTLNINVPFACMAKGSYRNAGNERFYMPNREDFTLKNDSKVMLYLQSLRNEAHRFAITSHRKKRDKQFFVSPLSKITSIGDKRKNALMSHFGSVENISKASLAEIQNVARISKELAEVILKHVDNKE |
2NRW Chain:A ((345-554)) | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EALEELMKLLNMKDFPYRIEGIDISH-----TVASLVVF-EDGFPKKGDYRRYKIEQ----DDYESIRTVVKRRYS---KHPLPNLLFVDGGIGQVNAAIEALKEIGKDCPVVGLAKKE------ETVVFENRE-IHLPHDHPVLRLLVQIRDETHRFAVSYHR-----ESLRSVLDNVPGIGPIRKKKLIEHFGSLENIRSASLEEIARVIG-STEIARRVL------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2NRW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -127187 for 1455 contacts (-87.4/contact) +
2D Compatibility (PS) -21476 + (NN) -10416 + (LL) 27680
1D Compatibility (HY) -17600 + (ID) 4000
Total energy: -152999.0 ( -105.15 by residue)
QMean score : 0.687
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