Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFLVVTLPFMIFFNNEVGNYKVQFSYGCVYYATNEYVHAGDKFYSNYFIDSHYGREINMYPQSELLAKGYVGNTLPILISLDKDLIK
2XVF Chain:A ((81-103))
-------------------------------------------FADYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNT
General information:
TITO was launched using:
RESULT:
Template:
2XVF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -8667 for 84 contacts (-103.2/contact) +
2D Compatibility (PS) -2317 + (NN) -494 + (LL) 3244
1D Compatibility (HY) -2400 + (ID) 450
Total energy: -11084.0 ( -131.95 by residue)
QMean score : -0.109
(partial model without unconserved sides chains):
PDB file :
Tito_2XVF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2XVF-query.scw
PDB file :
Tito_Scwrl_2XVF.pdb
: