Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKDPVLNAVTFLMVPLIILFALYIQFHGDYTPGGGFQAGIIIASGIILYSMLFGVSTTLKAIPYSAIKFTSMLGI-FIYGGTGIATVLLGQNFLSYDILLANNVAGQKLGIFLVELGVALTVCSSMLIIYIDFARRKK
1BIM Chain:A ((87-150))
-----------------------------------GFLSQDIITVGGITVTQMFGEVTEMPALPFMLAEFDGVVGMGFIEQAIGRVTPIF-DNIISQGVLKEDVFSFYYNRDSESLGGQIVLGGSDPQHYEGNFHYINL
General information:
TITO was launched using:
RESULT:
Template:
1BIM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48057 for 337 contacts (-142.6/contact) +
2D Compatibility (PS) -6199 + (NN) 2996 + (LL) 2548
1D Compatibility (HY) -4800 + (ID) 1000
Total energy: -54512.0 ( -161.76 by residue)
QMean score : -0.118
(partial model without unconserved sides chains):
PDB file :
Tito_1BIM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1BIM-query.scw
PDB file :
Tito_Scwrl_1BIM.pdb
: