Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKFLLKPKKSLGQNFILSSEITKRIVVLAGNLEDFNVIEIGPGYGALTKEILAHNPKSLLAIEKDSNLVKCHDQLLNE---HQGKFRIVEADALYVVEEELIERPVKVIANLPYNISLALFLKWLNKIKLFTTFTLMFQKEVADRIIARPNSKDYGSLSVLSQLLCDIRREFDIEPKEFFPRPKVYSSVITVKPL---PTQRFAVNLEALTKLTRAVFAQRRKMLRNSLQNVTNRTETALENAKLSGNERPKNLTVEQFCLLANNM
4JXJ Chain:A ((31-274))
--------------NFIFDGSLCDKIVRASGLEENSNVLEIGPGTGGLTRSILHKNPKLLTVIETDERCI----PLLNEIKQYHPNLNIIKQDALKLKLSDLNTNKITIISNLPYHIGTELVIRWLKESSLVASMTLMLQKEVVERICAKPSTKAYGRLSVICSLIATVEKCFDVAPTAFYPPPKVYSAIVKLTPLENIPNSDLISKVELITKMA---FAGRRKMIKSSLKNLAPNISELLAKLNISDNCRAENLTPNDYLSLASLI
General information:
TITO was launched using:
RESULT:
Template:
4JXJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -143009 for 1922 contacts (-74.4/contact) +
2D Compatibility (PS) -26099 + (NN) -13550 + (LL) 1492
1D Compatibility (HY) -24400 + (ID) 4850
Total energy: -210416.0 ( -109.48 by residue)
QMean score : 0.549
(partial model without unconserved sides chains):
PDB file :
Tito_4JXJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JXJ-query.scw
PDB file :
Tito_Scwrl_4JXJ.pdb
: