Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSFLIVANWKMNGTRSLFVNFIGKLNDKSNEITSKLVICPPFTSLPG-NIELNSNISIGAQNCHYKKSGSYTGEISAEMLKELGCTYVILGHSERTH---ETNGEIKLKSETAIESGLHPIICVGENLEDRESSKTKEVVEYQCKS---RLPIHGEYTVAYEPIWAIGTGHVPSNNAIAEVIEVIQSY---------TSKKHVIYGGSVSLENIENLSNILNLSGVLIGSASLDFDRFHKIVQQVEKAY
4OHQ Chain:A ((7-249))
--FFVGGNWKCNGTKDSIAKLISDLNSATLEADVDVVVSPPFVYIDQVKSSLTDRIDISGQNSWVGKGGAFTGEISVEQLKDLGCKWVILGHSERRHVIGEKDEFIGKKAAYALSEGLGVIACIGEKLEEREAGKTFDVCFAQLKAFADAVPSWDNIVVAYEPVWAIGTGKVASPQQAQEVHVAVRGWLKKNVSEEVASKTRIIYGGSVNGGNSAELAKEEDIDGFLVGGASLKGPEFATIVNSVTSKK
General information:
TITO was launched using:
RESULT:
Template:
4OHQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -133818 for 1891 contacts (-70.8/contact) +
2D Compatibility (PS) -24381 + (NN) -6305 + (LL) 180
1D Compatibility (HY) -16800 + (ID) 4850
Total energy: -185974.0 ( -98.35 by residue)
QMean score : 0.487
(partial model without unconserved sides chains):
PDB file :
Tito_4OHQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4OHQ-query.scw
PDB file :
Tito_Scwrl_4OHQ.pdb
: