Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFIQIEETPNPNTLKFLPGFAILNERETADFSNPDEIKNSKLAADLFQIEHVIRVFFGHDFISVTKS-DGISWDILKVEILTTVMDHFTSGGKALDRKGVNDNNIPDEEFFDENDIEIVNRIKELMENYIKPAVAQDGGDIKFRGYKDGIVYVELQGACSGCPSAAITLKQGVQNMLCYHIPEVSGIETTL
2LTM Chain:A ((11-105))
MFIQTQDTPNPNSLKFIPGKPVLETR-TMDFPTPAAAFRSPLARQLFRIEGVKSVFFGPDSITVTKENEELDWNLLKPDIYATIMDFFASGLPLVTEE---------------------------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2LTM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -72942 for 657 contacts (-111.0/contact) +
2D Compatibility (PS) -10340 + (NN) -7310 + (LL) 5224
1D Compatibility (HY) -9200 + (ID) 2350
Total energy: -96918.0 ( -147.52 by residue)
QMean score : 0.565
(partial model without unconserved sides chains):
PDB file :
Tito_2LTM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LTM-query.scw
PDB file :
Tito_Scwrl_2LTM.pdb
: