Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNAKRKVVIYIKQYCPFCKRAKELLDEKGVKYEEIDVFKNSDLFSNIKLKYNV-RTVPQIFIADKNGNYVHHIAGCDKLMDLEREGKLDDMLSTNYDKTDVTTYTSNSDEYEEYVASHDDFM
4MJA Chain:A ((17-99))
------KIEIYTWSTCPFCMRALALLKRKGVEFQEYCIDGDNEAREAMAARANGKRSLPQIFIDDQ------HIGGCDDIYILDGAGKLDPLLHS----------------------------
General information:
TITO was launched using:
RESULT:
Template:
4MJA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60168 for 566 contacts (-106.3/contact) +
2D Compatibility (PS) -8992 + (NN) -2454 + (LL) 1736
1D Compatibility (HY) -6400 + (ID) 1700
Total energy: -77978.0 ( -137.77 by residue)
QMean score : 0.808
(partial model without unconserved sides chains):
PDB file :
Tito_4MJA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4MJA-query.scw
PDB file :
Tito_Scwrl_4MJA.pdb
: