Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMIFRLLFLLVFISVNSYAVIKQDLSNNHYIQKINEITSKELLLPLPDDKLLGDSKAPILMIEYASLTCYHCSLFHREVFPEIKKKYIDTGKMLYIFRHFPLDYRGLKAAMLSYCYEKQEDYFNFNKAVFNSIDSWNYSNLSDLTVLQKVAALSNLKQDTFNRCINDKEVMDKIINDKSLAINKLGIMATPIFFIKLNNDRSHTEPNKIRHEGYKAQEYFTNVIDRLYEKAIVK--
3F4S Chain:A ((20-218))
-------------------------------------TSNELLLPLPNDKLLGDPKAPILMIEYASLTCYHCSLFHRNVFPKIKEKYIDTGKMLYIFRHFPLDYRGLKAAMLSHCYEKQEDYFNFNKAVFNSIDSWNYYNLSDLTLLQRIAALSNLKQDAFNQCINDKKIMDKIVNDKSLAINKLGITAVPIFFIKLNDDKSYIEHNKVKHGGYKELKYFTNVIDKLYGKAIVKLE
General information:
TITO was launched using:
RESULT:
Template:
3F4S.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -138656 for 1505 contacts (-92.1/contact) +
2D Compatibility (PS) -21044 + (NN) -10970 + (LL) 3956
1D Compatibility (HY) -29600 + (ID) 8300
Total energy: -204614.0 ( -135.96 by residue)
QMean score : 0.696
(partial model without unconserved sides chains):
PDB file :
Tito_3F4S.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3F4S-query.scw
PDB file :
Tito_Scwrl_3F4S.pdb
: