Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MEQKQSKSVAIWLFLCSIMIVLMVGIGGFTRLSKAGLSITEWNPITGAFPPLNERDWLQEKSKYETTPEYKTFNYGMSMEEFRTLYLIEYVHRLFARLTGLIFILPFIYFTLKKRISKKVVIRLSIALSFGVLQAFTGWYMVKSGLVAKPHVSHYMLTLHLLLALVIFALLSYQFFNYQVRQKQTKLKISGSTVHYVGIILILIVVQIIFGAFVAGLNAGLIYNTFPLMGGHIIPKDLFFLQPTWLNIFENRATVQFIHRTLALLILVLTTVLTIKNASVKSVYVMLLSVIIQIILGVVTLLLHIPITIAISHQMFSFILFGSGLCFLCYLRKQN |
| 4NPV Chain:A ((143-235)) | -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ECAIVYNDRSVLENHHISSVFRLMQDDEMNIFINLTKDEFVELRALVIEMVLATDMSCHFQQVKTMKTALQQLERIDKPKALSLLLH---AADISHPTKQWLVHSRWTKALMEEFFRQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4NPV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -53313 for 520 contacts (-102.5/contact) +
2D Compatibility (PS) -9231 + (NN) -347 + (LL) 20548
1D Compatibility (HY) -4400 + (ID) 1150
Total energy: -47893.0 ( -92.10 by residue)
QMean score : 0.135
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