Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSTSLIVGLAFFVGFIFSYKLLKKVIKNALNDKRNKSKLTNEEIEKFRRDMLEYYKKSSEKYKKLDEEVNKMMN--EAFDKADSIIKHNRKQLDRTLDDNARSYLEKVTDQVEKAIGDLQANTANIAADAVKKIMQEHKDDKRSSEVISSFSRNLNKKLH
3EDV Chain:A ((101-201))
-----------------------------LIDTRTQILAASYELHKFYHDAKEIFGRIQDKHKKLPEELGRDQNTVETLQRMHTTFEHDIQALGTQV------------RQLQEDAARLQAAYAGDKADDIQ---------KRENEVLEAWKSLLDACES
General information:
TITO was launched using:
RESULT:
Template:
3EDV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 12697 for 544 contacts (23.3/contact) +
2D Compatibility (PS) -10665 + (NN) -4777 + (LL) 4128
1D Compatibility (HY) -3200 + (ID) 1450
Total energy: -3267.0 ( -6.01 by residue)
QMean score : 0.402
(partial model without unconserved sides chains):
PDB file :
Tito_3EDV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3EDV-query.scw
PDB file :
Tito_Scwrl_3EDV.pdb
: