Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MIGSPVILAPMSGVTDYPFRSIVKKLGASLLVSEMIASRAMIMQTRQSMQKA--KVDELTAVQLAGCEPDIMAEAAKLNEDMGAKIIDINFGCPVKKVVNGYAGSALMRNEKKAAEIIEAVVKAVNVPVTVKIRTGWNNENRNAPRLAKIAEDLGAKMITVHGRTRAQLYNGQADWKFIRNVKEQVKIPVIVNGDIKSLNDIQNALKESRADGVMIGRGAYGRPWLINQAINFLSGSEVSEPTASEKLSIILEHYDNILEYYGNDAGIKIARKHIGWYSSGFKNSSEFRVRVNNMTDSMEVKENIVSFFSQV |
1VHN Chain:A ((5-307)) | ---VKVGLAPMAGYTDSAFRTLAFEWGADFAFSEMVSAKGFLMNSQKTEELLPQPHERNVAVQIFGSEPNELSEAARILSE-KYKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVSGKFSVKTRLGWEK--NEVEEIYRILVEEGVDEVFIHTRTVVQSFTGRAEWKALSVLEK--RIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIGRPWIFKQIKDFLRSGKYSEPSREEILRTFERHLELLIKTKGERKAVVEMRKFLAGYTKDLKGARRFREKVMKIEEVQILKEMFYNFIKEV |
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General information:
TITO was launched using:
| RESULT:
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Template: 1VHN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -160095 for 2582 contacts (-62.0/contact) +
2D Compatibility (PS) -33057 + (NN) -12948 + (LL) 784
1D Compatibility (HY) -17600 + (ID) 4900
Total energy: -227816.0 ( -88.23 by residue)
QMean score : 0.630
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