Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMIGSPVILAPMSGVTDYPFRSIVKKLGASLLVSEMIASRAMIMQTRQSMQKA--KVDELTAVQLAGCEPDIMAEAAKLNEDMGAKIIDINFGCPVKKVVNGYAGSALMRNEKKAAEIIEAVVKAVNVPVTVKIRTGWNNENRNAPRLAKIAEDLGAKMITVHGRTRAQLYNGQADWKFIRNVKEQVKIPVIVNGDIKSLNDIQNALKESRADGVMIGRGAYGRPWLINQAINFLSGSEVSEPTASEKLSIILEHYDNILEYYGNDAGIKIARKHIGWYSSGFKNSSEFRVRVNNMTDSMEVKENIVSFFSQV
1VHN Chain:A ((5-307))---VKVGLAPMAGYTDSAFRTLAFEWGADFAFSEMVSAKGFLMNSQKTEELLPQPHERNVAVQIFGSEPNELSEAARILSE-KYKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVSGKFSVKTRLGWEK--NEVEEIYRILVEEGVDEVFIHTRTVVQSFTGRAEWKALSVLEK--RIPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIGRPWIFKQIKDFLRSGKYSEPSREEILRTFERHLELLIKTKGERKAVVEMRKFLAGYTKDLKGARRFREKVMKIEEVQILKEMFYNFIKEV


General information:
TITO was launched using:
RESULT:

Template: 1VHN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -160095 for 2582 contacts (-62.0/contact) +
2D Compatibility (PS) -33057 + (NN) -12948 + (LL) 784
1D Compatibility (HY) -17600 + (ID) 4900
Total energy: -227816.0 ( -88.23 by residue)
QMean score : 0.630

(partial model without unconserved sides chains):
PDB file : Tito_1VHN.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1VHN-query.scw
PDB file : Tito_Scwrl_1VHN.pdb: