Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKSDDKEERLLSEKHKSNPSMAVKWQRNIFTKTESQSSSKLYLVDLAKKSHKIISTPT----------SAYLPDWSHF
2WKD Chain:A ((17-53))
-------------------------------------------VSTAKGDKKIISVPLFEKEVKVAYGSAFMPDFIQM
General information:
TITO was launched using:
RESULT:
Template:
2WKD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2662 for 78 contacts (-34.1/contact) +
2D Compatibility (PS) -2259 + (NN) 1264 + (LL) 2816
1D Compatibility (HY) -1200 + (ID) 500
Total energy: -2541.0 ( -32.58 by residue)
QMean score : 0.409
(partial model without unconserved sides chains):
PDB file :
Tito_2WKD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2WKD-query.scw
PDB file :
Tito_Scwrl_2WKD.pdb
: