Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIDRPLSPHLQIYKVQVTNFFSIMHRLTGILLFLLLVM-------LSWYFTLHVYFPELFIVKCLN---VLLSTFIAKLVCILCFISFSYHFLNGIRHLLWDAGFNLEITDVLKSAMLLTVMLILSTMAFLFVFI
4YTM Chain:C ((52-169))
-LKRPIAPHLTIYKPQMTWMVSGLHRVTGCAMAGTLLIGGVGFSVLPLDFTTFVEF-----IRGLGIPWVILDTF----KFIIAF-PIAFHTLNGIRFIGFDMAKGTDIPSIYRGAYLVLGLAALISLAVVVYPR
General information:
TITO was launched using:
RESULT:
Template:
4YTM.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -70014 for 578 contacts (-121.1/contact) +
2D Compatibility (PS) -10897 + (NN) -7592 + (LL) 1476
1D Compatibility (HY) -10400 + (ID) 2000
Total energy: -99427.0 ( -172.02 by residue)
QMean score : 0.325
(partial model without unconserved sides chains):
PDB file :
Tito_4YTM.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YTM-query.scw
PDB file :
Tito_Scwrl_4YTM.pdb
: