Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSYMKNEQDIRSQGVYYSAGLRSYLTKVYNYMALALGITGLIAFLTVFFDLFQVIYSNPVLSIVVILSPIVLVFYMSHRLQYLSAQSTVTVFFLFSVLMGLSLSYIFIVYTTENIARAFFITSIMFGSMALYGNSTKKDLTSMGSFLIMGIWGLIIASIVNLFLG-SSPLYFAISFISVIVFTLMTAYDAQRIKDVYYRYNDGSEAVTTKLAIFGATNLYFDFINVFLNLLRLLNLFNNRD
4PGR Chain:A ((9-215))
-----------------HESKQSIMQRILTVFVFTLLIATVGLFIGQFVP------VALMLPLSILEVAMIILAFWMRRRKAVGYAFVYTFAFVSGITLFPIVSHYASIAGAYVVLEAFGSTFVIFAVLGTIGAKMKKDLSFLWSFLLVAVLALAVVGIFNIFSPLNSAAMMAYSVIGTIVFSLYILYDLNQIKH---------RHITEDLIPVMALSLYLDFINLFINLLRFFGILSS--
General information:
TITO was launched using:
RESULT:
Template:
4PGR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -215954 for 1583 contacts (-136.4/contact) +
2D Compatibility (PS) -21029 + (NN) -4908 + (LL) 2364
1D Compatibility (HY) -24400 + (ID) 2600
Total energy: -266527.0 ( -168.37 by residue)
QMean score : 0.304
(partial model without unconserved sides chains):
PDB file :
Tito_4PGR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4PGR-query.scw
PDB file :
Tito_Scwrl_4PGR.pdb
: