Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIKFVRLLSSILVALSVIFLGYCYFTKKGIFAPAVIHNAEVKIGGDFSLINQDGQVIRSNDFKDKYMMIFFGFSSCKKICPMNLGIISETLAKLDEKT-SDKLQTFFITVDPECDSTEKLKEFQQQFDYRIQMLTGERKKIDEVIANYKVYTSKVG---GEEG-INHSSIIYLIGPGGKYVTHFAADLNSDESQSDKIAAEIKKYINEL
2GGT Chain:A ((2-162))
------------------------------------------LGGPFSLTTHTGERKTDKDYLGQWLLIYFGFTHCPDVCPEELEKMIQVVDEIDSITTLPDLTPLFISIDPERDTKEAIANYVKEFSPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNK-----RKGEIAASIATHMRPY
General information:
TITO was launched using:
RESULT:
Template:
2GGT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -96469 for 1211 contacts (-79.7/contact) +
2D Compatibility (PS) -17129 + (NN) -9484 + (LL) 4212
1D Compatibility (HY) -13200 + (ID) 2500
Total energy: -134570.0 ( -111.12 by residue)
QMean score : 0.639
(partial model without unconserved sides chains):
PDB file :
Tito_2GGT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GGT-query.scw
PDB file :
Tito_Scwrl_2GGT.pdb
: