Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDENINFETDTTFALIKEAQRRKYKVFAYAPSNLALKLNQPIALAQKVSVDD-----CNFTSKEDVVINLNEMDIIFIRQDPPFDMRYITTTYILEKTR---ALVINNPTEMRNCPEKLITSLFPELIPPTLITENISMIRDFYHDYRGIILKPLYSYGGNDVIRI-QNENSIQVVVELMITKYKCPVIAQAFCKNV-NKDKRILLLDGQPIG-VMKRVPRVSGEIRTNLRLGASFEPVEMNDRDNEICNKIGPELKKRGLIFVGIDIVDDFLLEINITSPTGVVYINKLYNTSLEKDLWNTFEEKASSHISQPSL |
| 1GSA Chain:A ((13-312)) | ---NINIKKDSSFAMLLEAQRRGYELHYMEMGDLYLINGEARAHTRTLNVKQNYEEWFSFVGEQD--LPLADLDVILMRKDPPFDTEFIYATYILERAEEKGTLIVNKPQSLRDCNEKLFTAWFSDLTPETLVTRNKAQLKAFWEKHSDIILKPLDGMGGASIFRVKEGDPNLGVIAETLTEHGTRYCMAQNYLPAIKDGDKRVLVVDGEPVPYCLARIPQ-GGETRGNLAAGGRGEPRPLTESDWKIARQIGPTLKEKGLIFVGLDIIGDRLTEINVTSPTCIREIEAEFPVSITGMLMDAIEARLQ-------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1GSA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -157623 for 2302 contacts (-68.5/contact) +
2D Compatibility (PS) -30830 + (NN) -5624 + (LL) 1100
1D Compatibility (HY) -25600 + (ID) 5400
Total energy: -223977.0 ( -97.30 by residue)
QMean score : 0.464
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