Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTHFVTDKCIKCKYTDCVEVCPVDCFYEGKNMLVINPDECIDCGVCIPECPVDAIVTDDSIKDILELDEELLSNEQKTFKSFYNINIEYSQKWPNITAKKQPLHTAEKYKEKKDKTAYFNENLE
1PC4 Chain:A ((2-105))
-AFVVTDNCIKCKYTDCVEVCPVDCFYEGPNFLVIHPDECIDCALCEPECAAQAIFSEDEVPE--------------DMQEFIQLNAELAEVWPNITEKKDPLPDAEDWDGVKGKLQHLER---
General information:
TITO was launched using:
RESULT:
Template:
1PC4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -62607 for 800 contacts (-78.3/contact) +
2D Compatibility (PS) -10824 + (NN) -6358 + (LL) 1476
1D Compatibility (HY) -13200 + (ID) 2900
Total energy: -94413.0 ( -118.02 by residue)
QMean score : 0.578
(partial model without unconserved sides chains):
PDB file :
Tito_1PC4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PC4-query.scw
PDB file :
Tito_Scwrl_1PC4.pdb
: