Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDLSKITIAS---DAVNVIIEISANAEPVKYEFDKELGLLRVDRFLSTAMVYPCNYGFVPNTCAGDGDPVDVLVLTQFPLAPGVLISVRPVGALLTKDEKGKDEKVLAVPVSSVDSYYDHVKNCSDLPKNLLDKITHFFLHYKDLEKEKTVTVGEWVDAEKAKKIVESAIKSRN
3LD3 Chain:A ((26-195))
----DIGSGSNAPEEVNVVIEVSQDSHPVKYEFDEKNGALWVDRFLPTAMYYPCNYGFIPNTIAGDGDPVDVLVLARFPVMPGAVICVRPVGVLMMNDEKGEDAKVLAVPATKVDQYYGNIVNYSDLPSSFLDSISHFFSFYKKLEKDKFVSVGCWQDAASAKELIRSAIIAAK
General information:
TITO was launched using:
RESULT:
Template:
3LD3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -98343 for 1295 contacts (-75.9/contact) +
2D Compatibility (PS) -18057 + (NN) -2905 + (LL) 280
1D Compatibility (HY) -19600 + (ID) 5050
Total energy: -143675.0 ( -110.95 by residue)
QMean score : 0.582
(partial model without unconserved sides chains):
PDB file :
Tito_3LD3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LD3-query.scw
PDB file :
Tito_Scwrl_3LD3.pdb
: