Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRILLIEDDQVSAKTVVNALTSDGHFCDVVTSAQDYNNNMVSSNGDHYDLVILDIHLPGDIDGYDILLRLRSAKIKVPVLILSCISAVNHKAKGLGYGADDYLTKPFHKSELLARIKAIVRRTKGHPESVIKIGNININFDHRVVEVKGKTVHLTNKEYSMIELLALRKGTVLTKEMFLDHLYNGLDEPSDNKIVDVFMCKLRKKLESANDGKSHIETVWGRGYVLKEYVDEEEYSSINVGENSSDYQAEQVKDNA
1KGS Chain:A ((4-224))
-RVLVVEDERDLADLITEALKKEMFTVDVCYDG---EEGMYMALNEPFDVVILDIMLPV-HDGWEILKSMRESGVNTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRRKSESKSTKLVCGDLILDTATKKAYRGSKEIDLTKKEYQILEYLVMNKNRVVTKEELQEHLW-----V-FSDVLRSHIKNLRKKVDK-GFKKKIIHTVRGIGYVARDE---------------------------
General information:
TITO was launched using:
RESULT:
Template:
1KGS.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -135566 for 1642 contacts (-82.6/contact) +
2D Compatibility (PS) -24104 + (NN) -15891 + (LL) 1608
1D Compatibility (HY) -18400 + (ID) 3800
Total energy: -196153.0 ( -119.46 by residue)
QMean score : 0.589
(partial model without unconserved sides chains):
PDB file :
Tito_1KGS.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1KGS-query.scw
PDB file :
Tito_Scwrl_1KGS.pdb
: