Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDKDLILLGIASVIGA---LTGLWLSFTALSHLI--IGGVIAAIPVMLLSAYYICDSIRKGKFSKKDLFESYLCMLHKCHDWSWSCCNRNCFFPGAMIGIGYATLAGGAIAPIIAIFPMYSIIVPIAEKVNEYIIFPIIEYFSLKGKEHEQV
4RET Chain:A ((292-351))
-----IITGVAVFLGVSFFILSLILEYTWLEAVIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTSTICSPHDKTGTLTQNRMTVAHMWSDNQIHEADTTENQSGVSFDKTSATWLALSRIAGLCNRAVFQANQE
General information:
TITO was launched using:
RESULT:
Template:
4RET.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23715 for 245 contacts (-96.8/contact) +
2D Compatibility (PS) -5424 + (NN) -524 + (LL) 296
1D Compatibility (HY) -8000 + (ID) 800
Total energy: -38167.0 ( -155.78 by residue)
QMean score : -0.016
(partial model without unconserved sides chains):
PDB file :
Tito_4RET.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RET-query.scw
PDB file :
Tito_Scwrl_4RET.pdb
: