Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNIHSDSPRQCLEEIIKS---ASAKFNESIDIAVNLGIDSRKSEEQVRGTVVLPKGIGKDIKVAVFTQGKHLLEAEKAGANIVGGEDLVQEIKKGKKLDVDWCITTPDFIAKITPIAKILGAKGLMPNPKFGTMTSNVAEAIKTIKSGQIKFRTDKNGIIHGKLGNIKFSVDDLLKNLKAFLKVIKSNKPIS--VKGVYFKSVFLNSTMGKAYKMSKVEDII
3QOY Chain:A ((18-232))
--NKRYTLEEAVDLLKKMEEVLQRRFDETVELAMRLNVDPRYADQMVRGSVVLPHGLGKPIKVVVFAEGEYAKKAEEAGADYVGGDELINKILKEEWTDFDVAIATPEMMPKVAKLGRILGPRGLMPSPKTGTVTTNVEQAIKDAKRGRVEFKVDKAGNVHMPVGKISFEKEKLIDNLYAAIDAVVRAKPPGAKG--QYIKNMAVSLTMSPSVKLDINEVLK
General information:
TITO was launched using:
RESULT:
Template:
3QOY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -108439 for 1678 contacts (-64.6/contact) +
2D Compatibility (PS) -22832 + (NN) -12173 + (LL) 20
1D Compatibility (HY) -14400 + (ID) 3950
Total energy: -161774.0 ( -96.41 by residue)
QMean score : 0.576
(partial model without unconserved sides chains):
PDB file :
Tito_3QOY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3QOY-query.scw
PDB file :
Tito_Scwrl_3QOY.pdb
: