Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MFVNGGQLKKINQKWLIIGTGLLLFMMMLPSIILLAKMTIGLVMVLVVAIAIKIASKTISNVLEDKQADPNQLTSQTTQSRIINLAVGLVSIFTGGLSLLIIAKTGIAVICAAVVTLAIYEYAKDYKYAEDKEIGKSINDKLDEIAKNTTNFIVSGIEKLVSPQEQQV----
4DOX Chain:A ((11-174))
IAFPAITQEQMSSIKVDPTSNLL------PSQEQLKSVSTLMVAAKVPAASVTTVALELVNFCYDNGSSAYTTVTGPSSIPEISLAQLASIVKASGTSLRKFCRYFAPIIWNLRTDKMAPANWEASGY--KPSAKFAAFDFFDGVENPAAMQPPSGLTRSPTQEERIANATN
General information:
TITO was launched using:
RESULT:
Template:
4DOX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50440 for 1146 contacts (-44.0/contact) +
2D Compatibility (PS) -16599 + (NN) -787 + (LL) 1356
1D Compatibility (HY) 5200 + (ID) 1150
Total energy: -62420.0 ( -54.47 by residue)
QMean score : 0.189
(partial model without unconserved sides chains):
PDB file :
Tito_4DOX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DOX-query.scw
PDB file :
Tito_Scwrl_4DOX.pdb
: