Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTTVINRKYRISRRLGINLWGRA------KDPVNRRKYPPGQRGILGFKRLSDFGKQFAAHKKFKFYYAISSKQLRRIFLDAYNRKGYTADNFIGILESRLSSVLYHSGLVPTIYSAKQLISHKHVTVNDKIVNIPSYRVKPGDIVKIRERAAKIPVIVEAVQKQE-RKAPDYLEADSKEYSVKYLRIPQYSEVPYSADMEVNLVVEFYSR
1HR0 Chain:D ((2-209))
-GRYIGPVCRLCRREGVKLYLKGERCYSPKCAMERRPYPPGQHGQKRARRPSDYAVRLREKQKLRRIYGISERQFRNLFEEASKKKGVTGSVFLGLLESRLDNVVYRLGFAVSRRQARQLVRHGHITVNGRRVDLPSYRVRPGDEIAVAEKSRNLELIRQNLEAMKGRKVGPWLSLDVEGMKGKFLRLPDREDL--ALPVQENLVIEFYSR
General information:
TITO was launched using:
RESULT:
Template:
1HR0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -92417 for 1524 contacts (-60.6/contact) +
2D Compatibility (PS) -20618 + (NN) -4251 + (LL) 160
1D Compatibility (HY) -15200 + (ID) 3700
Total energy: -136026.0 ( -89.26 by residue)
QMean score : 0.484
(partial model without unconserved sides chains):
PDB file :
Tito_1HR0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1HR0-query.scw
PDB file :
Tito_Scwrl_1HR0.pdb
: