Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | ------------------------MYVCGPTVYDTAHIGNARSIVVYDVLFQLLKFCYGKATYVRNITDIDDKIINAANEKDSSIESISTYYTRAFHEDMRSINCVEPTHEPKAAENIKYIIELIEYLLQSGHAYE-SNKHIYFSIESYPEYGALSGKKIDELEHGSRVEVGENKKHPGDFVLWKPANDTDYKLSSYWNSPWGEGRPGWHIECSAMSYAYLGKDFDIHGGGIDLQFPHHENEIAQNKSAFAGSMFAKYWVHNGSLTVNKEKMSKSLFNIVKVRDLLDSGIKGEVIRYALFKTHYRKPLDWTESVISESQETLNKFYRLLRGIDVASIEKSDVEVSRDFIETLKNDLNIPEALAILHEMATKINKT--NNENEKLKLTESFIKSARFIGLLESSYQEWFTA-----GISYQEIKRLIDLRKVAKQNKDYDAADKIRDQLKQMGVTISDNEDGTTTW--- |
| 1U0B Chain:B ((1-461)) | MLKIFNTLTRQKEEFKPIHAGEVGMYVCGITVYDLCHIGHGRTFVAFDVVARYLRFLGYKLKYVRNITDIDDKIIKRANENGESFVAMVDRMIAEMHKDFDALNILRPDMEPRATHHIAEIIELTEQLIAKGHAYVADNGDVMFDVPTDPTYGVLSRQDLDQLQAGARVDVVDDKRNPMDFVLWKMSKEGE----PSWPSPWGAGRPGWHIECSAMNCKQLGNHFDIHGGGSDLMFPHHENEIAQSTCAHDGQ-YVNYWMHSGMVMVDREKMSKSLGNFFTVRDVLKYY-DAETVRYFLMSGHYRSQLNYSEENLKQARAALERLYTALRGTDKTVAPAGGEAFEARFIEAMDDDFNTPEAYSVLFDMAREVNRLKAEDMAAANAMASHLRKLSAVLGLLEQEPEAFLQSGAQADDSEVAEIEALIQQRLDARKAKDWAAADAARDRLNEMGIVLEDGPQG-TTWRRK |
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General information:
TITO was launched using:
| RESULT:
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Template: 1U0B.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -153106 for 3459 contacts (-44.3/contact) +
2D Compatibility (PS) -45558 + (NN) -14755 + (LL) 768
1D Compatibility (HY) -35600 + (ID) 9250
Total energy: -257501.0 ( -74.44 by residue)
QMean score : 0.496
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