Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTKGDWEAVIGLEVHAQVSSKTKLFSSSSTEFGAEHNTQVSLVDAAMPGTLPILNYYSIEQAIRTGLALSAEINKSSYFDRKNYFYPDLPQGYQITQFFEPIVKNGRIFI--NNNKKEVRIARIHLEQDAGKSIHEESKTYVDLNRAGVALMEIVSEPDLRSSEEAAEFMKKLRQILRYIGSCDGDMEKGSLRCDANVSVRPKGSSTFGTRCEIKNLNSICYIMQAIDYEIQRQIEILESGEKISQDTLLFDVSLGKTKVMRNKEDASDYRYFPEPDLLPVEISQDKIDSIRSSLPELPDQKKLRYIRELSINKYDADVITSDKAIANYFEELIKKH-DSKLAVTWLTVELFGRLNKAGIDIVSSPIKANALSELLDFIVDGTISARLGKQVFDIMFETGKPASLIIKEQDLKQITDKGQISEIIDKIINDNQDKVQEYQNGKTKLYGFFVGEVMKLTKGKASPDVVNFILSEKLSS-------- |
3IP4 Chain:B ((1-482)) | ---MHFETVIGLEVHVELKTDSKMFSPSPAHFGAEPNSNTNVIDLAYPGVLPVVNKRAVDWAMRAAMALNMEIATESKFDRKNYFYPDNPKAYQISQFDQPIGENGYIDIEVDGETKRIGITRLHMEEDAGKSTHKGEYSLVDLNRQGTPLIEIVSEPDIRSPKEAYAYLEKLRSIIQYTGVSDVKMEEGSLRCDANISLRPYGQEKFGTKAELKNLNSFNYVRKGLEYEEKRQEEELLNGGEIGQETRRFDESTGKTILMRVKEGSDDYRYFPEPDIVPLYIDDAWKERVRQTIPELPDERKAKYVNELGLPAYDAHVLTLTKEMSDFFESTIEHGADVKLTSNWLMGGVNEYLNKNQVELLDTKLTPENLAGMIKLIEDGTMSSKIAKKVFPELAAKGGNAKQIMEDNGLVQISDEATLLKFVNEALDNNEQSVEDYKNGKGKAMGFLVGQIMKASKGQANPQLVNQLLKQELDKRLEHHHHH |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3IP4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -211377 for 3702 contacts (-57.1/contact) +
2D Compatibility (PS) -50910 + (NN) -16372 + (LL) 324
1D Compatibility (HY) -36400 + (ID) 10400
Total energy: -325135.0 ( -87.83 by residue)
QMean score : 0.509
|
|
|