Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKAVVLLNLGGPDSLSAVRPFLFNLFYDKRIINLPNPFRFFLAKFISAKRENNARKIYEQIGGKSPILENTKMQAEALERELNRSVFCHPSSVTLGPRKENWIPVSRIGMTSKLTKVFICMRYWHPFANEVVKSVKQFDPDEVILLPLYPQYSTTTTLSSIENWQKNAKQY--GIKCNTKIIRHHYDNQDFIEAHANLITKHYKLAS--EVGKPRVLFSAHSLPLSVIKKGDPYALQVEETVKLIVKKLHIKDLDWSICYQSKIGPVKWLEPSTESELLRAKADGV-PVVLLPISFVSEHSETLVELDMEYKT-IIKD-G--YYFRIPTLSTNSLFIKCLAGLCINHS |
| 3HCN Chain:A ((3-324)) | PKTGILMLNMGGPETLGDVHDFLLRLFLDRDLMTLP--IQNKLAPFIAKRRTPKIQEQYRRIGGGSPIKIWTSKQGEGMVKLLDELS-----------------------PNTAPHKYYIGFRYVHPLTEEAIEEMERDGLERAIAFTQYPQYSCSTTGSSLNAIYRYYNQVGRKPTMKWSTIDRWPTHHLLIQCFADHILKELDHFPLEKRSEVVILFSAHSLPMSVVNRGDPYPQEVSATVQKVMERLEYC-NPYRLVWQSKVGPMPWLGPQTDESIKGLCERGRKNILLVPIAFTSDHIETLYELDIEYSQVLAKECGVENIRRAESLNGNPLFSKALADLVHSHI |
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General information:
TITO was launched using:
| RESULT:
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Template: 3HCN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -174389 for 2571 contacts (-67.8/contact) +
2D Compatibility (PS) -34134 + (NN) -21151 + (LL) 552
1D Compatibility (HY) -21600 + (ID) 5400
Total energy: -256122.0 ( -99.62 by residue)
QMean score : 0.583
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