Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLKIATWNVNSIRKRVDQLCSFIVDDQIDIILLQEIKCTEEQFPYVEIEKLGYECIVYGEVARNGVCVLSKHPILE-KFKIDIVEGYQEARYIECLIKHNNQKMRVVSIYVPNGQSLGSHVFEYKLKFLDNLYERMDNLLKNEELIVIAGDYNVAPDEIDVFDPTLLNGQVCFHIKEREKLKAILNLGFKDAFRMSHPNLQQFSWWRYQGNSLRNNQGMRIDHMLLSPQAVDKLGICYIDDRLRKLENPSDHTPIVSIMEW
2JC4 Chain:A ((1-256))
-MKITTWNVNSLNVRLPQVQNLLADNPPDILVLQELKLDQDKFPAAALQMMGWHCVWSGQKTYNGVAIVSRSVPQDVHFGLPALPDDPQRRVIAATV----SGVRVINVYCVNGEALDSPKFKYKEQWFAALTEFVRDEMTRHGKLVLLGDFNIAPADADCYDPEKWHEKIHCSSVERQWFQNLLDLGLTDSLRQVHPEGAFYTWFDYRGAMFQRKLGLRIDHILVSPAMAAALKDVRVDLETRALERPSDHAPVTAEFDW
General information:
TITO was launched using:
RESULT:
Template:
2JC4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -188455 for 2173 contacts (-86.7/contact) +
2D Compatibility (PS) -27460 + (NN) -15267 + (LL) 156
1D Compatibility (HY) -18800 + (ID) 4050
Total energy: -253876.0 ( -116.83 by residue)
QMean score : 0.516
(partial model without unconserved sides chains):
PDB file :
Tito_2JC4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JC4-query.scw
PDB file :
Tito_Scwrl_2JC4.pdb
: