Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLPATPDNSTAVAIIPIAAILGIIPIATSVAPIAPNNNAKPIVHPPEKVLEGCCFCEEIMLVYYKTVARCFVFCANYYYFHHLQTFFEMELYYL
4J3N Chain:A ((440-480))
-----------IPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLDPHPMLPNYKNFKGTIQELGQNQYAVSGEIFVVDRNTVEIT
General information:
TITO was launched using:
RESULT:
Template:
4J3N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10681 for 188 contacts (-56.8/contact) +
2D Compatibility (PS) -4024 + (NN) 3479 + (LL) 312
1D Compatibility (HY) -2800 + (ID) 750
Total energy: -14464.0 ( -76.94 by residue)
QMean score : 0.093
(partial model without unconserved sides chains):
PDB file :
Tito_4J3N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4J3N-query.scw
PDB file :
Tito_Scwrl_4J3N.pdb
: