Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
--MNINIKNLVHAFSKLPSLGPSSSRRLVIHLLQNKEKVMLPLASSIKELADLIIECKVCGNLDTQSPCSICTNPKRDTKLMCVVEELGDLWAFEKGSIYSGMYHVLGGRLSAINGIGPEKLNLDNIPKRVTEFKIEEVIIAINPTLEGQVTVQYIIESLKNLDVKVSRLACGIPMGGEIDYLDEGTLKAALTSRQEYESNIK
1VDD Chain:A ((1-199))
MKYPPSLVSLIRELSRLPGIGPKSAQRLAFHLFEQPREDIERLASALLEAKRDLHVCPICFNITDAEKCDVCADPSRDQRTICVVEEPGDVIALERSGEYRGLYHVLHGVLSPMNGVGPDKLHIKPLLPRVGQ--GMEVILATGTTVEGDATALYLQRLLEPLGAAISRIAYGVPVGGSLEYTDEVTLGRALTGRQTVSKP--
General information:
TITO was launched using:
RESULT:
Template:
1VDD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -101181 for 1252 contacts (-80.8/contact) +
2D Compatibility (PS) -21066 + (NN) -9761 + (LL) 464
1D Compatibility (HY) -16800 + (ID) 3850
Total energy: -152194.0 ( -121.56 by residue)
QMean score : 0.415
(partial model without unconserved sides chains):
PDB file :
Tito_1VDD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VDD-query.scw
PDB file :
Tito_Scwrl_1VDD.pdb
: