Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MITLDGRLVAHKHINVNKGELAHRHSTLAGGKPVL--CP-VLKVEKGKITYIGNNSEHYKPALANLYNAVKN
3G8Z Chain:A ((110-135))
-----------------------------NGVTLKQAGVDLLRIEDGKIVEVRLFSADQTQEDAFWGR----
General information:
TITO was launched using:
RESULT:
Template:
3G8Z.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1868 for 66 contacts (-28.3/contact) +
2D Compatibility (PS) -2784 + (NN) -506 + (LL) 2452
1D Compatibility (HY) -1200 + (ID) 300
Total energy: -4206.0 ( -63.73 by residue)
QMean score : 0.643
(partial model without unconserved sides chains):
PDB file :
Tito_3G8Z.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3G8Z-query.scw
PDB file :
Tito_Scwrl_3G8Z.pdb
: