Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MSKKDYYKLLGVDRNASTDEIKKAYKKLALKYHPDRNPGNKEAEEKFKEITAAYEVLSDSEKRAGYDRYGHEGA-----SGGFDFSQGFGSAGDFSDIFNDFFG-GEFGSSSRSKAKRSTTGVPGADLRYDLEITLEDAFKGIQAPIHYVTNVKCDMCQGRG-SEGATKPVQCHTCQGSG----------------RIRTQQGFFTIERTCTTCYGEGEIIQNKCKKCNGSGRRRDEVNISVSIPKGIEEGAKVRVSGKGEAGAKGGKSGDLYVYVKIT-PHKIFTRNKADLHCKVPIRMTLAVLGGEIDVQSIDGAKIKVKVPEGTQTSTKLRCKEKGMPYMNSYARGDLYVQIIVETLNPNNLTKKQIELLKALEEEENASIQQQSEGFFSKVKKK |
| 4J80 Chain:A ((3-260)) | -AKKDYYAILGVPRNATQEEIKRAYKRLARQYHPDVN-KSPEAEEKFKEINEAYAVMSDPEKRRIYDTYGTTEAPPPPPPGGYDFS-GF-DVEDFSEFFQELFGPGLFGK--------------GRDLRAELPLTLEEAFHGGERVVE-VAGRRVSVRMPPGVREGSVIRVPGMGGQGNPPGDLLLVVRMLPHPVFRLEGQDLYATLDVPAPIA-----VVGGKVRAMTLEG------PVEVAVPPRTQAGRKMRLKGGGFPGPAG--RGDLYLEVRITIPERLTPEEEALWKKLAEAYYAR------------------------------------------------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4J80.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -46853 for 1445 contacts (-32.4/contact) +
2D Compatibility (PS) -25389 + (NN) -9229 + (LL) 7832
1D Compatibility (HY) -16000 + (ID) 5150
Total energy: -94789.0 ( -65.60 by residue)
QMean score : 0.502
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