Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNPIICALDTQDLNEAISLANTLRDKVGMIKLGLEFFAAHGPSGVREVAKCNVPTFLDLKLHDIPNTVAKTVEAIKVLNIEILTLHISGGTKMLEEALSIVKDTK---TKLIGVTVLTSMSNEDLSELGIAREVKSQVILFAKLAKKVGLHGIVCSALEAQEVYQECGKDFKIITSGIRVGFG-HDDQKRTATPKEAINSGADYIVIGRPITKSNSPANSAELILKSLS
3LDV Chain:A ((28-254))
-PKVIVALDYDNLADALAFVDKIDPSTCRLKVGKEMFTLFGPDFVRELHKRGFSVFLDLKFHDIPNTCSKAVKAAAELGVWMVNVHASGGERMMAASREILEPYGKERPLLIGVTVLTSMESADLQGIGILSAPQDHVLRLATLTKNAGLDGVVCSAQEASLLKQHLGREFKLVTPGIRPAGSEQGDQRRIMTPAQAIASGSDYLVIGRPITQAAHPEVVLEEINSSL-
General information:
TITO was launched using:
RESULT:
Template:
3LDV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -165427 for 1820 contacts (-90.9/contact) +
2D Compatibility (PS) -24178 + (NN) -11326 + (LL) 180
1D Compatibility (HY) -18000 + (ID) 4750
Total energy: -223501.0 ( -122.80 by residue)
QMean score : 0.597
(partial model without unconserved sides chains):
PDB file :
Tito_3LDV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3LDV-query.scw
PDB file :
Tito_Scwrl_3LDV.pdb
: