Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MYKLLISIKEVKIIAIVKNMGVAYVFSKIQPKATIIATITLVFVALALYLVPGLGLIFALFATIPGIVLWNKSIQSFGVSALITVIITTVLGNTFVLSAIILVLIASLIIGQLLKERTSKERMLYVTTVAMSLISLIAFMLLQTFGRIPPSASIVKPFKQTLHEAITMSGADANMTQILEEGFRQATVQLPGFIIIITFLIVLINLIVTFPVLRKFKIATPVFKPLFAWQMSGILLWIYIIVIICLLFTGQPSVFQSILLNFQLVLSLVMYIQGLSVIHFFGKAKGLPNAVTILLLIIGTILTPTTHIVGLLGVIDLSLNLKRIMKNNSKK |
| 1RP3 Chain:A ((0-234)) | --------------------HMKNPYSNQIEREELILKYLPLVKAIATNIKKHLPE-----------DVDIRDLISYGVIGLIKAVDNLSTENPKRAEAYIKLRIKGAIYDYLR----SLDFGSRQVREKERRIKEVVEKLKEKLGREPTDEEVAKELGIS-TEELFKTLDKINFSYILSLEEVFRDFARDY----------------SELIPSSTNVEEEVIKRELTEKVKEAVS----------KLPEREKLVIQLIFYEELPAKEVAKILETS-------------------------------VSRVSQLKAKALERLREMLSN--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1RP3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -155373 for 1690 contacts (-91.9/contact) +
2D Compatibility (PS) -23736 + (NN) -1909 + (LL) 10896
1D Compatibility (HY) 11600 + (ID) 1000
Total energy: -159522.0 ( -94.39 by residue)
QMean score : 0.099
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