Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKITILAVGKLKEKYWKQAIAEYEKRLGPYTKIDIIEVPDEKAPENMSDKEIEQVKEKEGQRILAKIKPQSTVITLEIQGKMLSSEGLAQELNQRMTQGQSDFVFVIGGSNGLHKDVLQRSNYALSFSKMTFPHQMMRVVLIEQVYRAFKIMRGEAYHK
4FAK Chain:A ((5-163))
MKITILAVGKLKEKYWKQAIAEYEKRLGPYTKIDIIEVPDEKAPENMSDKEIEQVKEKEGQRILAKIKPQSTVITLEIQGKMLSSEGLAQELNQRMTQGQSDFVFVIGGSNGLHKDVLQRSNYALSFSKMTFPHQMMRVVLIEQVYRAFKIMRGEAYHK
General information:
TITO was launched using:
RESULT:
Template:
4FAK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -90876 for 1198 contacts (-75.9/contact) +
2D Compatibility (PS) -17845 + (NN) -11840 + (LL) 0
1D Compatibility (HY) -22400 + (ID) 7950
Total energy: -150911.0 ( -125.97 by residue)
QMean score : 0.715
(partial model without unconserved sides chains):
PDB file :
Tito_4FAK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4FAK-query.scw
PDB file :
Tito_Scwrl_4FAK.pdb
: