Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSTFKPLPIFILSVLSSLPKARLSKNKIFIVFRFSSVTDKTTQNKKDTREVSRIFYSAIAPDC
4RM4 Chain:A ((138-182))
-----PLPVIVISELLGVPSAHMEQFKAWSDLLVSTPKDKSEEAEK-----------------
General information:
TITO was launched using:
RESULT:
Template:
4RM4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -4891 for 180 contacts (-27.2/contact) +
2D Compatibility (PS) -4289 + (NN) -2080 + (LL) 1604
1D Compatibility (HY) -2400 + (ID) 600
Total energy: -12656.0 ( -70.31 by residue)
QMean score : 0.310
(partial model without unconserved sides chains):
PDB file :
Tito_4RM4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RM4-query.scw
PDB file :
Tito_Scwrl_4RM4.pdb
: