Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLTVYGHRGLPSKAPENTIASFKAASEVEGINWLELDVAITKDEQLIIIHDDYLERTTNMSGEITELNYDEIKDASAGSWFGEKFKDEHLPTFDDVVKIANEYNMNLNVELKGITGPNGLALSKSMVKQVEEQLTNLNQNQEVLISSFNVVLVKLAEEIMPQYNRAVIFHTTSFREDWRTLLDYCNAKIVNTEDAKLTKAKVKMVKEAGYELNVWTVNKPARANQLANWGVDGIFTDNADKMVHLSQ
2OTD Chain:A ((9-238))
---IVAHRGGGKLAPENTLAAIDVGAKY-GHKMIEFDAKLSKDGEIFLLHDDNLERTSNGWGVAGELNWQDLLRVDAGSWYSKAFKGEPLPLLSQVAERCREHGMMANIEIKPTTGTG--PLTGKMVALAARQL--WAGMTPPLLSSFEIDALEAAQQAAPELPRGLLL--DEWRDDWRELTARLGCVSIHLNHKLLDKARVMQLKDAGLRILVYTVNKPQHAAELLRWGVDCICTDAID-------
General information:
TITO was launched using:
RESULT:
Template:
2OTD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -86722 for 2000 contacts (-43.4/contact) +
2D Compatibility (PS) -25258 + (NN) -12594 + (LL) 1388
1D Compatibility (HY) -14400 + (ID) 4150
Total energy: -141736.0 ( -70.87 by residue)
QMean score : 0.530
(partial model without unconserved sides chains):
PDB file :
Tito_2OTD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2OTD-query.scw
PDB file :
Tito_Scwrl_2OTD.pdb
: