Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDNKTYEISSAEWEVMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKKDNKIFQYYSLVEESDIKYKTSKNFINKVYKGGFNSLVLNFVEKEDLSQDEIEELRNILNKK
1SAX Chain:B ((3-122))
--NKTYEISSAEWEVMNIIWMKKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKKDNKIFQYYSLVEESDIKYKTSKNFINKVYKGGFNSLVLNFVEKEDLSQDEIEELRNILNK-
General information:
TITO was launched using:
RESULT:
Template:
1SAX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -48715 for 718 contacts (-67.8/contact) +
2D Compatibility (PS) -12783 + (NN) -3656 + (LL) 196
1D Compatibility (HY) -18000 + (ID) 6000
Total energy: -88958.0 ( -123.90 by residue)
QMean score : 0.556
(partial model without unconserved sides chains):
PDB file :
Tito_1SAX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SAX-query.scw
PDB file :
Tito_Scwrl_1SAX.pdb
: